PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014566-PA
Common NameOsI_16952
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 443aa    MW: 48983.4 Da    PI: 4.7906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014566-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13369415354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k L
  BGIOSGA014566-PA 369 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 415
                       5899***********************7.....6***************977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-4720193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.063366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-15369420No hitNo description
SuperFamilySSF474593.4E-17369430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10370415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16370427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MASAPPVQEE ALQPGTNHFR SRLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDH TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVAALSPED IADTEWYYVV  120
CMTYAFRPGQ GLPGRSYASN RSVWLCNAQS ADSKTFLRAL LAKTIVCIPF MSGVLELGTT  180
DPVSEDPNLV NRIVAYLKEL QFPICLEVPS STPSLDETED ADTVFDGLIE EHQMVILQGE  240
DELGDVVVAE CETNGANPET ITMETDEFYS LCEELDLDLG SYQLVPTSAR ETVAAAANDV  300
DGVAYSHASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS NIDDRGSVAI  360
TTTPGSNIKS HVMSERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT YLKVLEKRVK  420
ELESSSREPS RWRPTEIGQG KAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2051932188Transcription factor MYC3
4rqw_B1e-2051932188Transcription factor MYC3
4rs9_A1e-2051932188Transcription factor MYC3
4yz6_A1e-2051932188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374379ERRRRE
2375380RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO154256280.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635095.10.0PREDICTED: anthocyanin regulatory R-S protein
RefseqXP_015635094.10.0PREDICTED: anthocyanin regulatory R-S protein
SwissprotP135261e-129ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0H4630.0A0A0E0H463_ORYNI; Uncharacterized protein
TrEMBLB8ASW40.0B8ASW4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA014566-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-67bHLH family protein